PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g04080.1
Common NameLR48_Vigan02g275000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family RAV
Protein Properties Length: 281aa    MW: 32078.2 Da    PI: 8.1196
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g04080.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.61.7e-091461255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    ++kGV    ++g W A+I+       + +r++lg+f ++ eAa a++ a  kl++
  Vang06g04080.1 14 KFKGVV-PQQNGNWGAQIYA------NhQRIWLGTFKSEREAAMAYDSASIKLRN 61
                    789996.666999****999......44**********99**********99997 PP

2B384.31.1e-26134227182
                     EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                     f+k+ltpsdv+k++rlv+pkk+a ++            +++   ++++ ++d+  r+W+++++y+k+s++yv+t+GW++Fvk+++Lk++D++ F
  Vang06g04080.1 134 FQKELTPSDVGKLNRLVIPKKHAVTYfpnvcdggaeshEENVSADVEVAFYDRLMRQWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDTIAF 227
                     99******************************99887744555889*********************************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.90E-211371No hitNo description
SMARTSM003801.0E-171475IPR001471AP2/ERF domain
PROSITE profilePS5103216.7661469IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-151471IPR016177DNA-binding domain
PfamPF008473.9E-51461IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-161469IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.9E-30131229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-25132230IPR015300DNA-binding pseudobarrel domain
CDDcd100171.85E-23133227No hitNo description
SMARTSM010194.1E-19134238IPR003340B3 DNA binding domain
PfamPF023628.3E-24134227IPR003340B3 DNA binding domain
PROSITE profilePS5086311.293134253IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MQEENNAAGP LLQKFKGVVP QQNGNWGAQI YANHQRIWLG TFKSEREAAM AYDSASIKLR  60
NGDSHRNFPW NDQTVQEPQF QSHYSTETML SMIRDGTYPS RFATFLSTRQ QGGVLKHVTL  120
KDDGKEQLCC TQLFQKELTP SDVGKLNRLV IPKKHAVTYF PNVCDGGAES HEENVSADVE  180
VAFYDRLMRQ WKFRYCYWKS SQSYVFTRGW NRFVKDKKLK AKDTIAFFTC EPVDCRKGGE  240
GEAFGLIDVI YSSDEDTKDE HTLKDLNAEK GLKLFGVLIK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-2613322713100DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512024.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6881e-100RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A0L9U1E20.0A0A0L9U1E2_PHAAN; Uncharacterized protein
STRINGGLYMA20G39140.21e-146(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-101RAV family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]